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USC-OGP 2-DE database

Two-dimensional polyacrylamide gel electrophoresis database


USC-OGP 2-DE database 
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Searching in 'USC-OGP 2-DE database' for entry matching: P05455




USC-OGP 2-DE database:  P05455


P05455


General information about the entry
View entry in simple text format
Entry nameLA_HUMAN
Primary accession numberP05455
integrated into USC-OGP 2-DE database on January 17, 2017 (release 1)
2D Annotations were last modified onJanuary 17, 2017 (version 1)
General Annotations were last modified on April 5, 2017 (version 2)
Name and origin of the protein
DescriptionRecName: Full=Lupus La protein; AltName: Full=La autoantigen; AltName: Full=La ribonucleoprotein; AltName: Full=Sjoegren syndrome type B antigen; Short=SS-B;.
Gene nameName=SSB
Annotated speciesHomo sapiens (Human) [TaxID: 9606]
TaxonomyEukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo.
References
[1]   2D GEL CHARACTERIZATION
Author 1., Author 2.
Submitted (Mar-2011) to Current
2D PAGE maps for identified proteins
How to interpret a protein

UVEAL_MELANOMA_3-10 {UVEAL MELANOMA 3-10}
Homo sapiens (Human)
UVEAL_MELANOMA_3-10
  map experimental info
 
UVEAL_MELANOMA_3-10

MAP LOCATIONS:
pI=6.86; Mw=59744

Cross-references
UniProtKB/Swiss-ProtP05455; LA_HUMAN.



2D PAGE maps for identified proteins
  • How to interpret a protein map
  • You may obtain an estimated location of the protein on various 2D PAGE maps, provided the whole amino acid sequence is known. The estimation is obtained according to the computed protein's pI and Mw.
  • Warning 1: the displayed region reflects an area around the theoretical pI and molecular weight of the protein and is only provided for the user's information. It should be used with caution, as the experimental and theoretical positions of a protein may differ significantly.
  • Warning 2: the 2D PAGE map is built on demand. This may take some few seconds to be computed.



External data extracted from UniProtKB/Swiss-Prot
Extracted from UniProtKB/Swiss-Prot, release: 0.0
Entry nameLA_HUMAN
Primary accession numberP05455
Secondary accession number(s) Q15367 Q53XJ4
Sequence was last modified on July 1, 1989 (version 2)
Annotations were last modified on March 15, 2017 (version 202)
Name and origin of the protein
DescriptionRecName: Full=Lupus La protein; AltName: Full=La autoantigen; AltName: Full=La ribonucleoprotein; AltName: Full=Sjoegren syndrome type B antigen; Short=SS-B;
Gene nameName=SSB
Encoded onName=SSB
Keywords3D-structure; Acetylation; Complete proteome; Nucleus; Phosphoprotein; Polymorphism; Reference proteome; RNA-binding; Systemic lupus erythematosus.
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/help/license. Distributed under the Creative Commons Attribution-NoDerivs License
Cross-references
EMBLX13697; CAA31985.1; -; mRNA
EMBLJ04205; AAA51885.1; -; mRNA
EMBLBT009862; AAP88864.1; -; mRNA
EMBLAB451228; BAG70042.1; -; mRNA
EMBLAC009967; AAY14868.1; -; Genomic_DNA
EMBLCH471058; EAX11258.1; -; Genomic_DNA
EMBLCH471058; EAX11259.1; -; Genomic_DNA
EMBLBC001289; AAH01289.1; -; mRNA
EMBLBC020818; AAH20818.1; -; mRNA
EMBLM20328; AAA36577.1; -; mRNA
CCDSCCDS2237.1; -; .
PIRA31888; A31888; .
RefSeqNP_001281074.1; NM_001294145.1; .
RefSeqNP_003133.1; NM_003142.4; .
UniGeneHs.632535; -; .
PDB1OWX; NMR; -; A=225-334
PDB1S79; NMR; -; A=105-202
PDB1S7A; NMR; -; A=1-103
PDB1YTY; X-ray; 2.29 A; A/B=1-194
PDB1ZH5; X-ray; 1.85 A; A/B=1-194
PDB2VOD; X-ray; 2.10 A; A/B=4-194
PDB2VON; X-ray; 2.10 A; A/B=4-194
PDB2VOO; X-ray; 1.80 A; A/B=4-194
PDB2VOP; X-ray; 2.80 A; A=4-194
PDBsum1OWX; -; .
PDBsum1S79; -; .
PDBsum1S7A; -; .
PDBsum1YTY; -; .
PDBsum1ZH5; -; .
PDBsum2VOD; -; .
PDBsum2VON; -; .
PDBsum2VOO; -; .
PDBsum2VOP; -; .
DisProtDP00229; -; .
ProteinModelPortalP05455; -; .
SMRP05455; -; .
BioGrid112619; 100; .
DIPDIP-29750N; -; .
IntActP05455; 37; .
MINTMINT-5002383; -; .
STRING9606.ENSP00000260956; -; .
ChEMBLCHEMBL2040701; -; .
iPTMnetP05455; -; .
PhosphoSitePlusP05455; -; .
SwissPalmP05455; -; .
BioMutaSSB; -; .
DMDM125985; -; .
EPDP05455; -; .
MaxQBP05455; -; .
PaxDbP05455; -; .
PeptideAtlasP05455; -; .
PRIDEP05455; -; .
DNASU6741; -; .
EnsemblENST00000260956; ENSP00000260956; ENSG00000138385; .
EnsemblENST00000409333; ENSP00000386636; ENSG00000138385; .
GeneID6741; -; .
KEGGhsa:6741; -; .
UCSCuc002ufk.4; human; .
CTD6741; -; .
DisGeNET6741; -; .
GeneCardsSSB; -; .
HGNCHGNC:11316; SSB; .
HPACAB004643; -; .
HPAHPA017287; -; .
MIM109090; gene; .
neXtProtNX_P05455; -; .
OpenTargetsENSG00000138385; -; .
PharmGKBPA36140; -; .
eggNOGENOG410IQXQ; Eukaryota; .
eggNOGCOG5193; LUCA; .
GeneTreeENSGT00830000128380; -; .
HOGENOMHOG000006947; -; .
HOVERGENHBG001407; -; .
InParanoidP05455; -; .
KOK11090; -; .
OMATPDQKYK; -; .
OrthoDBEOG091G0K95; -; .
PhylomeDBP05455; -; .
TreeFamTF314476; -; .
ReactomeR-HSA-73980; RNA Polymerase III Transcription Termination; .
ReactomeR-HSA-749476; RNA Polymerase III Abortive And Retractive Initiation; .
SIGNORP05455; -; .
ChiTaRSSSB; human; .
EvolutionaryTraceP05455; -; .
GeneWikiSjogren_syndrome_antigen_B; -; .
GenomeRNAi6741; -; .
PMAP-CutDBP05455; -; .
PROPR:P05455; -; .
ProteomesUP000005640; Chromosome 2; .
BgeeENSG00000138385; -; .
CleanExHS_SSB; -; .
ExpressionAtlasP05455; baseline and differential; .
GenevisibleP05455; HS; .
GOGO:0030529; C:intracellular ribonucleoprotein complex; TAS:ProtInc; .
GOGO:0000784; C:nuclear chromosome; telomeric region; IDA:BHF-UCL
GOGO:0005634; C:nucleus; IDA:AgBase; .
GOGO:0003729; F:mRNA binding; TAS:ProtInc; .
GOGO:0000166; F:nucleotide binding; IEA:InterPro; .
GOGO:0003723; F:RNA binding; IDA:UniProtKB; .
GOGO:0000049; F:tRNA binding; TAS:ProtInc; .
GOGO:0008334; P:histone mRNA metabolic process; TAS:ProtInc; .
GOGO:0075522; P:IRES-dependent viral translational initiation; IDA:UniProtKB; .
GOGO:1903608; P:protein localization to cytoplasmic stress granule; IDA:AgBase; .
GOGO:0006400; P:tRNA modification; TAS:ProtInc; .
Gene3D1.10.10.10; -; 1; .
Gene3D3.30.70.330; -; 2; .
InterProIPR014886; La_RRM; .
InterProIPR002344; Lupus_La; .
InterProIPR006630; Lupus_La_RNA-bd; .
InterProIPR012677; Nucleotide-bd_a/b_plait; .
InterProIPR000504; RRM_dom; .
InterProIPR011991; WHTH_DNA-bd_dom; .
PfamPF05383; La; 1; .
PfamPF00076; RRM_1; 1; .
PfamPF08777; RRM_3; 1; .
PRINTSPR00302; LUPUSLA; .
SMARTSM00715; LA; 1; .
SMARTSM00360; RRM; 1; .
SUPFAMSSF46785; SSF46785; 1; .
SUPFAMSSF54928; SSF54928; 2; .
PROSITEPS50961; HTH_LA; 1; .
PROSITEPS50102; RRM; 1; .



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Database constructed and maintained by Angel Garcia, using the Make2D-DB II package (ver. 3.10.2) from the World-2DPAGE Constellation of the ExPASy web server

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